Our sequence alignment and variant call reports are generated by a tool called Geneious Prime. We export a select list of variables including CDS, polymorphism types, codon change, amino acid change, and protein effect. There is a wealth of information generated by Geneious that we cannot easily export to a static report, so we recommend that our clients consider using this software for a more interactive deep dive into their datasets.
Download a truncated sample of a sequence alignment and variant call report: Demo Sequence Alignment Report
For every project where we use Geneious, we export a “*.geneious” backup file to your account. If you decide to use a personal, academic, or commercial version of Geneious, you can import this “*.geneious” file into your version of the application, view all the results, and perform your own exploratory analysis of the sequencing datasets. Geneious offers a 14-day trial version and various pricing options that may be worth considering.
For in-depth information on how to read each section of the report check out the article How to read Geneious variant call reports.
The Sequencing Center is one of the leading HLA service providers in the USA. Offering affordable, high-coverage HLA typing results with 4-field resolution, we pride ourselves on providing clients with exceptional services, including DNA extraction, library prep, sequencing and bioinformatics. We work with leading research organizations world-wide across a variety of fields including immunology, oncology, transplantation, inherited diseases, neurodegenerative diseases, and drug discovery and development.
1020 Luke Street
Fort Collins, CO 80524
(970) 682-1288 (Direct to lab)
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