When sequencing runs are finished, we automatically upload FastQ files to a client’s Box.com account.
These files are typically found in the directory:
The FastQ files in this directory use the following naming convention:
In most, but not all, sequencing runs we use paired-end reads. In this format there is a forward read, “R1”, and a reverse read, “R2”, which together form a single paired-end read. The forward reads and reverse reads are stored in separate files. Many bioinformatics applications process these two files together, so you can keep track of them with the “R1” and “R2” identifiers.
Depending on the sequencing type, we may also include an “Alignments” or “Genotype” folder where we will store additional bioinformatics results.
The Sequencing Center is one of the leading service providers for HLA Typing and Whole Genome Sequencing (WGS) in the USA. Offering affordable, high-coverage HLA typing results with 4-field resolution and microbial scale WGS, we provide clients with exceptional services, including DNA extraction, library prep, sequencing and bioinformatics. We work with leading research organizations world-wide in various fields including immunology, oncology, transplantation, inherited diseases, neurodegenerative diseases, and drug discovery and development.
1020 Luke Street
Fort Collins, CO 80524
(970) 682-1288 (Direct to lab)
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