The Sequencing Center provides basic bioinformatics as an inclusive service with all genome sequencing projects. Here’s what you can expect to receive with each type of project.
FASTQ Files: All microbial sequencing projects receive the raw FASTQ files directly exported from our Illumina sequencers. Researchers can use FASTQ files as the starting point for most downstream bioinformatics and data analysis.
Geneious Variant Call Report: If you have a reference genome for us to align your sample against, we can generate a variant call report through a program called Geneious Prime. These reports will be stored in the “Genotype” directory in a hyperlink we send to you with your data. Projects that are unable to provide a reference genome will not include this report.
FASTQ Files: HLA projects receive raw FASTQ files directly from the sequencer.
GenDx Report: We use GenDx NGSgo and NGSengine for HLA projects. You will receive an NGSengine report for each GenDx HLA sequencing run.
FASTQ Files: All metagenomic and microbiome projects receive the raw FASTQ files directly from the sequencer.
Microbiome Report: Depending on the project, we will deliver either a Megan6 or One Codex report that shows the taxonomic classification of all organisms present in the sequenced samples.
In addition to the included basic bioinformatics, we often provide advanced bioinformatics for clients with more complex research objectives. This may include:
The Sequencing Center is a USA-owned and operated next-generation genome sequencing company offering affordable genome sequencing and bioinformatics for research, pharmaceutical, and clinical organizations. Our services are designed for organizations performing research on bacterial, viral, and human-oriented research. Among these services, our facility offers targeted sequencing methods for research fields including inherited diseases, oncology, neurodegenerative diseases, antibiotic-resistant gene analysis, and biomarker discovery for drug development optimization.
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