, ,

How to annotate a genome with Geneious

Geneious Annotations Geneious Prime includes genome annotation features and reports.  Annotation is often used to describe the structure and function of various genomic regions, such as genes, CDS's (coding sequences), exons, introns, 5'-…
, ,

How to create Geneious variant call reports

Geneious Reports We have numerous clients who use Geneious for bioinformatics data analysis.  They use Geneious for sequence alignments of their sample datasets against reference genomes and for the interpretation of Geneious variant call…
, , ,

Geneious sequence alignment & variant calls workflow

Geneious Prime is one of many bioinformatics tools that we use to postprocess sequencing datasets.  Geneious includes an extensive set of functions to perform sequence alignments of sample reads against reference genomes.  And it includes…

Sequence alignments with Geneious

Geneious Alignments We often use Geneious for the alignment of sequenced samples to reference genomes. When sequencing runs are finished, our sequencers generate raw FastQ files, which typically contain millions of short DNA fragments ("reads").…
, , ,

How to read Geneious variant call reports

Reading Geneious Reports We often use Geneious to generate SNP/indel variant call reports.  A truncated report is available here.  (The number of SNP's/indels in a typical report can be quite large so we only show a few records in this example).   Report…
, ,

How to use Phaster for bacteriophage bioinformatics

Phaster is a bioinformatics tool for analyzing bacteriophage sequencing data sets.  It generates a variety of phage identification and annotation results that are very useful for interpreting phage sequencing data.  Currently, Phaster contains…